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roxygen2 - In-Line Documentation for R

Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted comments. Writing documentation in-line with code makes it easier to keep your documentation up-to-date as your requirements change. 'roxygen2' is inspired by the 'Doxygen' system for C++.

Last updated

devtoolsdocumentationcpp

19.69 score 664 stars 234 dependents 2.7k scripts 286k downloads

usethis - Automate Package and Project Setup

Automate package and project setup tasks that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio' projects, and more.

Last updated

githubsetup

17.77 score 925 stars 348 dependents 5.7k scripts 226k downloads

chk - Check User-Supplied Function Arguments

For developers to check user-supplied function arguments. It is designed to be simple, fast and customizable. Error messages follow the tidyverse style guide.

Last updated

chk

11.75 score 50 stars 74 dependents 34 scripts 9.6k downloads

tibblify - Rectangle Nested Lists

A tool to rectangle a nested list, that is to convert it into a 'tibble'. This is done automatically or according to a given specification. A common use case is for nested lists coming from parsing 'JSON' files, or the 'JSON' responses of 'REST' 'APIs'. 'Rectangling' uses the 'vctrs' package, and therefore offers a wide support of vector types.

Last updated

cpp

9.52 score 75 stars 2 dependents 56 scripts 436 downloads

extras - Helper Functions for Bayesian Analyses

Functions to 'numericise' 'R' objects (coerce to numeric objects), summarise 'MCMC' (Monte Carlo Markov Chain) samples and calculate deviance residuals as well as 'R' translations of some 'BUGS' (Bayesian Using Gibbs Sampling), 'JAGS' (Just Another Gibbs Sampler), 'STAN' and 'TMB' (Template Model Builder) functions.

Last updated

9.15 score 10 stars 20 dependents 23 scripts 700 downloads

fledge - Smoother Change Tracking and Versioning for R Packages

Streamlines the process of updating changelogs (NEWS.md) and versioning R packages developed in git repositories.

Last updated

changeloggitpackage-creation

9.07 score 192 stars 14 scripts 343 downloads

mcmcr - Manipulate MCMC Samples

Functions and classes to store, manipulate and summarise Monte Carlo Markov Chain (MCMC) samples. For more information see Brooks et al. (2011) <isbn:978-1-4200-7941-8>.

Last updated

codamcmc

8.43 score 20 stars 12 dependents 189 scripts 496 downloads

yesno - Ask Yes-No Questions

Asks Yes-No questions with variable or custom responses.

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yesno

7.70 score 9 stars 27 dependents 14 scripts 1.6k downloads

dttr2 - Manipulate Date, POSIXct and hms Vectors

Manipulates date ('Date'), date time ('POSIXct') and time ('hms') vectors. Date/times are considered discrete and are floored whenever encountered. Times are wrapped and time zones are maintained unless explicitly altered by the user.

Last updated

7.36 score 15 stars 7 dependents 6 scripts 648 downloads

tidyplus - Additional 'tidyverse' Functions

Provides functions such as str_crush(), add_missing_column(), coalesce_data() and drop_na_all() that complement 'tidyverse' functionality or functions that provide alternative behaviors such as if_else2() and str_detect2().

Last updated

6.48 score 10 stars 5 dependents 2 scripts 321 downloads

ssdsims - Simulation Analyses for Species Sensitivity Distributions

Runs reproducible simulation studies for species sensitivity distribution (SSD) models built on the 'ssdtools' package. Expands a declarative scenario into per-step task tables, draws data, fits distributions, and estimates hazard concentrations, with a 'targets'-based, Hive-partitioned shard pipeline for running studies in parallel or on a cluster.

Last updated

quarto

6.34 score 1 stars 46 scripts

fishbc - Fishes of British Columbia

Provides raw and curated data on the codes, classification and conservation status of freshwater fishes in British Columbia. Marine fishes will be added in a future release.

Last updated

bcfish

5.92 score 5 stars 1 dependents 1 scripts 252 downloads

newdata - Generate New Data Frames for Prediction

Generates new data frames for predictive purposes. By default, all specified variables vary across their range while all other variables are held constant at the default reference value. Types, classes, factor levels and time zones are always preserved. The user can specify the length of each sequence, require that only observed values and combinations are used and add new variables. The result is intended to be passed to the prediction method of a fitted model object to visualize the effect of one or more variables while controlling for the others.

Last updated

5.81 score 5 stars 8 dependents 19 scripts

fwapgr - Client for BC Freshwater Atlas fwapg API

Client for fwapg, a PostgreSQL database and web API for BC Freshwater Atlas data.

Last updated

bcfreshwater-atlasfwapg

5.69 score 9 stars 1 dependents 9 scripts

timer - R6 Timer

A simple timer as an R6 class. The timer has four functions: start(), stop(), reset() and elapsed(). The elapsed() function returns the elapsed wall clock time (as opposed to CPU time) as an object of class lubridate::Duration.

Last updated

5.48 score 1 stars 4 dependents 113 scripts

bboutools - Boreal Caribou Survival, Recruitment and Population Growth

Estimates annual survival, recruitment and population growth for boreal caribou populations using Bayesian and Maximum Likelihood models with fixed and random effects.

Last updated

5.44 score 2 dependents 35 scripts

embr - Model Builder Utility Functions and Virtual Classes

Utility functions and virtual classes shared by model builder packages such as tmbr, jmbr and smbr.

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analysesmbr

5.23 score 3 stars 4 dependents 12 scripts

dbflobr - Read and Write Files to SQLite Databases

Reads and writes files to SQLite databases <https://www.sqlite.org/index.html> as flobs (a flob is a blob that preserves the file extension).

Last updated

blobdatabasesflobsqlite

5.05 score 5 stars 5 scripts 92 downloads

bbouretro - Traditional Survival, Recruitment and Population Growth Methods

Estimates annual survival, recruitment and population growth using the traditional methods. This package is part of the bbou suite of tools.

Last updated

5.02 score 1 dependents 3 scripts

jmbr - Analyses Using JAGS

Facilitates analyses using 'Just Another Gibbs Sampler'.

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jagsmbrcpp

4.88 score 3 stars 7 scripts

bbousims - Simulate Boreal Caribou Survival, Recruitment and Population Growth

Simulates survival and recruitment data for boreal caribou populations using hierarchical Bayesian models.

Last updated

4.73 score 1 dependents 8 scripts

flobr - Convert Files to and from Binary Objects (BLOBs)

Converts files to and from flobs. A flob is a file that was read into binary in raw-mode, saved as the single element of a named list (where the name is the name of the original file) and then serialized before being coerced into a blob. Flobs are useful for writing and reading files to and from databases.

Last updated

blobflob

4.69 score 10 stars 1 dependents 12 scripts 93 downloads

subfoldr2 - Save and Load R Objects

Facilitates saving and loading R objects, data frames, tables, plots, text blocks and numbers to subfolders.

Last updated

4.52 score 2 stars 1 dependents 5 scripts

fwatlasbc - Freshwater Atlas British Columbia

Queries the Freshwater Atlas (FWA) of British Columbia through the 'fwapg' API <https://www.hillcrestgeo.ca/fwapg/index.html> via the 'fwapgr' package and returns spatial data as simple features ('sf'). Also provides tools to convert streams to and from river meters, snap points to streams, and split, prune and join stream networks.

Last updated

bcfwapgfwapgr

4.52 score 11 stars 6 scripts

poispalette - Poisson Palettes

An R package for Poisson Consulting colour palettes.

Last updated

4.15 score 1 stars 4 scripts

bboudata - Data for bbou Project

This package contains boreal caribou demographic data which can be used as validation for the associated shiny-app and analysis. The overall goal of the bbou packages is to develop a more standardized and consistent method for the comparison of boreal caribou survival rates, recruitment and population dynamics across Canada.

Last updated

4.07 score 3 dependents 22 scripts

mcmcdata - Manipulate MCMC Samples and Data Frames

Manipulates Monte Carlo Markov Chain samples and associated data frames.

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4.02 score 1 stars 5 dependents 4 scripts

ssdvignettes - Species Sensitivity Distribution Vignettes

What the package does (one paragraph).

Last updated

3.95 score 1 scripts

kootlake - Kootenay Lake Data

Annual Rainbow Trout, Bull Trout and Kokanee datasets for Kootenay Lake.

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bcgovkootenay-lake

3.95 score 4 scripts

mcmcderive - Derive MCMC Parameters

Generates derived parameter(s) from Monte Carlo Markov Chain (MCMC) samples using R code. This allows Bayesian models to be fitted without the inclusion of derived parameters which add unnecessary clutter and slow model fitting. For more information on MCMC samples see Brooks et al. (2011) <isbn:978-1-4200-7941-8>.

Last updated

archivedpackagesr-universe

3.83 score 5 stars 9 dependents 7 scripts 353 downloads