Package: ssddata 1.0.0.9000

Rebecca Fisher

ssddata: Species Sensitivity Distribution Data

Reference data sets of species sensitivities to compare the results of fitting species sensitivity distributions using software such as 'ssdtools' and 'Burrlioz'. It consists of 17 primary data sets from four different Australian and Canadian organizations as well as five datasets from anonymous sources. It also includes a data set of the results of fitting various distributions using different software.

Authors:Rebecca Fisher [aut, cre], Joe Thorley [aut], Ayla Pearson [aut], Carl Schwarz [ctb], David Fox [ctb]

ssddata_1.0.0.9000.tar.gz
ssddata_1.0.0.9000.zip(r-4.7)ssddata_1.0.0.9000.zip(r-4.6)ssddata_1.0.0.9000.zip(r-4.5)
ssddata_1.0.0.9000.tgz(r-4.6-any)ssddata_1.0.0.9000.tgz(r-4.5-any)
ssddata_1.0.0.9000.tar.gz(r-4.7-any)ssddata_1.0.0.9000.tar.gz(r-4.6-any)
ssddata_1.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ssddata/json (API)

# Install 'ssddata' in R:
install.packages('ssddata', repos = c('https://poissonconsulting.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/open-aims/ssddata/issues

Pkgdown/docs site:https://open-aims.github.io

Datasets:

On CRAN:

Conda:

dataspecies-sensitivity-distributionssdquarto

5.81 score 2 stars 8 packages 17 scripts 506 downloads 5 exports 18 dependencies

Last updated from:29f9a10e9c. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK180
source / vignettesOK223
linux-release-x86_64OK164
macos-release-arm64OK170
macos-oldrel-arm64OK118
windows-develOK155
windows-releaseOK147
windows-oldrelOK152
wasm-releaseOK132

Exports:envirotox_data_setsget_ssddatagm_meanlist_datasetsssd_data_sets

Dependencies:chkclidplyrgenericsgluelifecyclemagrittrpillarpkgconfigR6rbibutilsRdpackrlangtibbletidyselectutf8vctrswithr

ANZTOX SSD Data Processing
Summary | Pipeline overview | Why exact reproduction of the ANZECC & ARMCANZ 2000 guideline input data is not possible | What can be approximated | Filtering approach: concentrationused | Structural differences between the 2000 and 2016 databases | Endpoint harmonisation between 2016 and 2000 | Chemical identifier resolution and CAS parent grouping | cas_parent_lookup | Grouped identifier columns | Chemical identifiers available post-mapping | Reference Data for 2016 Toxicity Values | Reference Resolution Strategy | Coverage | SSD eligibility workflow | 1. Base filters | 2. Test type classification and priority selection | 3. ACR conversion for retained acute records | 4. Geometric mean concentration per species × endpoint | 5. Most sensitive endpoint selection | 6. Minimum species and taxonomic group threshold | 7. Nesting | DGV matching | Purpose | Name-based CAS fallback | DGV matching summary | Remaining unmatched chemicals | References
Rendered fromANZTOX_data_processing.qmdusingquarto::html

Last update: 2026-06-15
Started: 2026-06-15

Endpoint 2016 to 2000 lookup build
Purpose | Executable source | Inputs | Method | Step 1 — Extract distinct 2016 endpoint labels | Step 2 — Normalise labels | Step 3 — Two-stage mapping to 2000 codes | Step 4 — Output | Outputs | How the lookup is used in the main pipeline | Outcomes (v2 refined) | Remaining unmapped labels | Notes
Rendered fromendpoint_2016_to_2000_lookup_build.qmdusingquarto::html

Last update: 2026-06-15
Started: 2026-06-15

Readme and manuals

Help Manual

Help pageTopics
Species Sensitivity Data for aluminium_marineaims_aluminium_marine
Species Sensitivity Data provided by AIMSaims_data
Species Sensitivity Data for gallium_marineaims_gallium_marine
Species Sensitivity Data for molybdenum_marineaims_molybdenum_marine
Anonymous Species Sensitivity Data anon_aanon_a
Anonymous Species Sensitivity Data anon_banon_b
Anonymous Species Sensitivity Data anon_canon_c
Anonymous Species Sensitivity Data anon_danon_d
Anonymous Species Sensitivity Dataanon_data
Anonymous Species Sensitivity Data anon_eanon_e
Species Sensitivity Data for alpha_cypermethrin_freshanzg_alpha_cypermethrin_fresh
Species Sensitivity Data for aluminium_marineanzg_aluminium_marine
Species Sensitivity Data for ametryn_freshanzg_ametryn_fresh
Species Sensitivity Data for ammonia_freshanzg_ammonia_fresh
Species Sensitivity Data for bisphenol_a_freshanzg_bisphenol_a_fresh
Species Sensitivity Data for bisphenol_a_marineanzg_bisphenol_a_marine
Species Sensitivity Data for boron_freshanzg_boron_fresh
Species Sensitivity Data for chlorine_marineanzg_chlorine_marine
Species Sensitivity Data for chromium_III_freshanzg_chromium_III_fresh
Species Sensitivity Data for copper_marineanzg_copper_marine
ANZG Species Sensitivity Dataanzg_data
Species Sensitivity Data for dioxins_freshanzg_dioxins_fresh
Species Sensitivity Data for diuron_freshanzg_diuron_fresh
Species Sensitivity Data for diuron_marineanzg_diuron_marine
Species Sensitivity Data for fipronil_freshanzg_fipronil_fresh
Species Sensitivity Data for fluoride_freshanzg_fluoride_fresh
Species Sensitivity Data for glyphosate_freshanzg_glyphosate_fresh
Species Sensitivity Data for iron_freshanzg_iron_fresh
Species Sensitivity Data for iron_marineanzg_iron_marine
Species Sensitivity Data for mancozeb_freshanzg_mancozeb_fresh
Species Sensitivity Data for manganese_marineanzg_manganese_marine
Species Sensitivity Data for mcpa_freshanzg_mcpa_fresh
Species Sensitivity Data for metolachlor_freshanzg_metolachlor_fresh
Species Sensitivity Data for metsulfuron_methyl_freshanzg_metsulfuron_methyl_fresh
Species Sensitivity Data for nickel_marineanzg_nickel_marine
Species Sensitivity Data for nitrate_hard_freshanzg_nitrate_hard_fresh
Species Sensitivity Data for nitrate_moderate_freshanzg_nitrate_moderate_fresh
Species Sensitivity Data for nitrate_soft_freshanzg_nitrate_soft_fresh
Species Sensitivity Data for paraquat_freshanzg_paraquat_fresh
Species Sensitivity Data for perfluorooctane_sulfonate_pfos_freshanzg_perfluorooctane_sulfonate_pfos_fresh
Species Sensitivity Data for picloram_freshanzg_picloram_fresh
Species Sensitivity Data for simazine_freshanzg_simazine_fresh
Species Sensitivity Data for simazine_marineanzg_simazine_marine
Species Sensitivity Data for sulfometuron_methyl_freshanzg_sulfometuron_methyl_fresh
Species Sensitivity Data for zinc_marineanzg_zinc_marine
ANZTOX Species Sensitivity Dataanztox_data
CCME Species Sensitivity Data for ccme_boronccme_boron
CCME Species Sensitivity Data for ccme_cadmiumccme_cadmium
CCME Species Sensitivity Data for ccme_chlorideccme_chloride
CCME Species Sensitivity Dataccme_data
CCME Species Sensitivity Data for ccme_endosulfanccme_endosulfan
CCME Species Sensitivity Data for ccme_glyphosateccme_glyphosate
CCME Species Sensitivity Data for ccme_silverccme_silver
CCME Species Sensitivity Data for ccme_uraniumccme_uranium
Species Sensitivity Data for chlorine_marinecsiro_chlorine_marine
Species Sensitivity Data for cobalt_marinecsiro_cobalt_marine
Species Sensitivity Data provided by CSIROcsiro_data
Species Sensitivity Data for lead_marinecsiro_lead_marine
Species Sensitivity Data for nickel_freshcsiro_nickel_fresh
Species Sensitivity Data from the EnviroTox Databaseenvirotox_data
List EnviroTox Dataset Namesenvirotox_data_sets
Get SSD datasetget_ssddata
Calculate geometric meangm_mean
List SSD Datasetsssd_data_sets
Species Sensitivity Distribution Fit Datassd_fits
Species Sensitivity Data from US EPA ECOTOX Databasewqbench_data