Package: bboutools 0.1.0
Seb Dalgarno
bboutools: Boreal Caribou Survival, Recruitment and Population Growth
Estimates annual survival, recruitment and population growth for boreal caribou populations using Bayesian and Maximum Likelihood models with fixed and random effects.
Authors:
bboutools_0.1.0.tar.gz
bboutools_0.1.0.zip(r-4.5)bboutools_0.1.0.zip(r-4.4)bboutools_0.1.0.zip(r-4.3)
bboutools_0.1.0.tgz(r-4.4-any)bboutools_0.1.0.tgz(r-4.3-any)
bboutools_0.1.0.tar.gz(r-4.5-noble)bboutools_0.1.0.tar.gz(r-4.4-noble)
bboutools_0.1.0.tgz(r-4.4-emscripten)bboutools_0.1.0.tgz(r-4.3-emscripten)
bboutools.pdf |bboutools.html✨
bboutools/json (API)
NEWS
| # Install 'bboutools' in R: |
| install.packages('bboutools', repos = c('https://poissonconsulting.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/poissonconsulting/bboutools/issues
Last updated 24 days agofrom:e383ae601b. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 28 2024 |
| R-4.5-win | OK | Oct 28 2024 |
| R-4.5-linux | OK | Oct 28 2024 |
| R-4.4-win | OK | Oct 28 2024 |
| R-4.4-mac | OK | Oct 28 2024 |
| R-4.3-win | OK | Oct 28 2024 |
| R-4.3-mac | OK | Oct 28 2024 |
Exports:augmentbb_fit_recruitmentbb_fit_recruitment_mlbb_fit_survivalbb_fit_survival_mlbb_plot_monthbb_plot_month_survivalbb_plot_yearbb_plot_year_growthbb_plot_year_population_changebb_plot_year_recruitmentbb_plot_year_survivalbb_plot_year_trend_recruitmentbb_plot_year_trend_survivalbb_predict_calf_cow_ratiobb_predict_growthbb_predict_lambdabb_predict_population_changebb_predict_recruitmentbb_predict_recruitment_trendbb_predict_survivalbb_predict_survival_trendbb_priors_recruitmentbb_priors_survivalcoefconvergedesrestimatesglancelogLikmodel_codemodel_recruitmentmodel_survivalnchainsnitersnobsnparsntermsparspredictrhatsamplestidy
Dependencies:abindbboudatachkclicodacolorspacecpp11dplyrextrasfansifarvergenericsggplot2gluegtablehmsigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmcmcderivemcmcrmgcvmunsellnewdatanimblenlistnlmenumDerivpillarpkgconfigpracmapurrrR6RColorBrewerrescalerlangscalesstringistringrtermtibbletidyrtidyselectuniversalsutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get Augmented Data from bboufit Object | augment.bboufit |
| Get Augmented Data from bboufit_ml Object | augment.bboufit_ml |
| Fit Recruitment Model | bb_fit_recruitment |
| Fit Recruitment Model with Maximum Likelihood | bb_fit_recruitment_ml |
| Fit Survival Model | bb_fit_survival |
| Fit Survival Model with Maximum Likelihood | bb_fit_survival_ml |
| Plot Month | bb_plot_month bb_plot_month.bboufit_survival bb_plot_month.data.frame |
| Plot Monthly Survival | bb_plot_month_survival bb_plot_month_survival.bboufit_survival bb_plot_month_survival.data.frame |
| Plot Year | bb_plot_year bb_plot_year.bboufit bb_plot_year.bboufit_ml bb_plot_year.data.frame |
| Plot Year Population Growth | bb_plot_year_growth |
| Plot Year Population Change | bb_plot_year_population_change |
| Plot Year Recruitment | bb_plot_year_recruitment bb_plot_year_recruitment.bboufit_recruitment bb_plot_year_recruitment.data.frame |
| Plot Year Survival | bb_plot_year_survival bb_plot_year_survival.bboufit_survival bb_plot_year_survival.data.frame |
| Plot Annual Recruitment Trend | bb_plot_year_trend_recruitment bb_plot_year_trend_recruitment.bboufit_recruitment bb_plot_year_trend_recruitment.data.frame |
| Plot Annual Survival Trend | bb_plot_year_trend_survival bb_plot_year_trend_survival.bboufit_survival bb_plot_year_trend_survival.data.frame |
| Predict Calf-Cow Ratio | bb_predict_calf_cow_ratio |
| Predict Population Growth Lambda | bb_predict_growth bb_predict_lambda |
| Predict Population Change | bb_predict_population_change |
| Predict Recruitment | bb_predict_recruitment |
| Predict Recruitment Trend | bb_predict_recruitment_trend |
| Predict Survival | bb_predict_survival |
| Predict Survival Trend | bb_predict_survival_trend |
| Recruitment model default priors | bb_priors_recruitment |
| Survival model default priors | bb_priors_survival |
| Get Tidy Tibble from bboufit Object. | coef.bboufit |
| Get Tidy Tibble from bboufit_ml Object. | coef.bboufit_ml |
| Get Convergence of bboufit Object | converged.bboufit |
| Get Convergence of bboufit_ml Object | converged.bboufit_ml |
| Get Effective Sample Rate of bboufit Object | esr.bboufit |
| Estimates for bboufit Object | estimates.bboufit |
| Estimates for bboufit_ml Object | estimates.bboufit_ml |
| Get a Glance Summary of bboufit Object | glance.bboufit |
| Get a Glance Summary of bboufit_ml Object | glance.bboufit_ml |
| Get Model Code | model_code model_code.bboufit model_code.bboufit_ml |
| Build Nimble recruitment model. | model_recruitment |
| Build Nimble survival model. | model_survival |
| Get Number of Chains from bboufit Object | nchains.bboufit |
| Get Number of Iterations from bboufit Object | niters.bboufit |
| Get Number of Parameters from bboufit Object | npars.bboufit |
| Get Number of Parameters from bboufit_ml Object | npars.bboufit_ml |
| Get Number of Terms from bboufit Object | nterms.bboufit |
| Get Number of Terms from bboufit_ml Object | nterms.bboufit_ml |
| Get Parameters from bboufit Object | pars.bboufit |
| Get Parameters from bboufit_ml Object | pars.bboufit_ml |
| Predict Recruitment | predict.bboufit_recruitment |
| Predict Survival | predict.bboufit_survival |
| Get Rhat of bboufit Object | rhat.bboufit |
| Get MCMC samples | samples samples.bboufit samples.bboufit_ml |
| Get Tidy Tibble from bboufit Object. | tidy.bboufit |
| Get Tidy Tibble from bboufit_ml Object. | tidy.bboufit_ml |
