{
  "_id": "6a223e7ecd65a98ecbd45244",
  "Package": "bboutools",
  "Title": "Boreal Caribou Survival, Recruitment and Population Growth",
  "Version": "1.3.0",
  "Authors@R": "c(\nperson(\"Seb\", \"Dalgarno\", , \"seb@poissonconsulting.ca\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3658-4517\")),\nperson(\"Joe\", \"Thorley\", , \"joe@poissonconsulting.ca\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-7683-4592\")),\nperson(\"John\", \"Boulanger\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-8222-1445\")),\nperson(\"Ayla\", \"Pearson\", , \"ayla@poissonconsulting.ca\", role = \"aut\"),\nperson(\"Josie\", \"Hughes\", , \"Josie.Hughes@ec.gc.ca\", role = \"ctb\",\ncomment = \"Multi-population and other extensions based on LandSciTech/bboutoolsMultiPop\"),\nperson(\"Province of Alberta\", role = \"cph\")\n)",
  "Description": "Estimates annual survival, recruitment and population\ngrowth for boreal caribou populations using Bayesian and\nMaximum Likelihood models with fixed and random effects.",
  "License": "Apache License (== 2.0) | file LICENSE",
  "URL": "https://github.com/poissonconsulting/bboutools,\nhttps://poissonconsulting.github.io/bboutools/",
  "BugReports": "https://github.com/poissonconsulting/bboutools/issues",
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  "Repository": "https://poissonconsulting.r-universe.dev",
  "Date/Publication": "2026-06-04 19:22:38 UTC",
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  "Author": "Seb Dalgarno [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3658-4517>),\nJoe Thorley [aut] (ORCID: <https://orcid.org/0000-0002-7683-4592>),\nJohn Boulanger [aut] (ORCID: <https://orcid.org/0000-0001-8222-1445>),\nAyla Pearson [aut],\nJosie Hughes [ctb] (Multi-population and other extensions based on\nLandSciTech/bboutoolsMultiPop),\nProvince of Alberta [cph]",
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  "_exports": [
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    "bb_fit_recruitment",
    "bb_fit_recruitment_ml",
    "bb_fit_survival",
    "bb_fit_survival_ml",
    "bb_plot_month",
    "bb_plot_month_survival",
    "bb_plot_year",
    "bb_plot_year_calf_cow_ratio",
    "bb_plot_year_growth",
    "bb_plot_year_population_change",
    "bb_plot_year_recruitment",
    "bb_plot_year_survival",
    "bb_plot_year_trend_calf_cow_ratio",
    "bb_plot_year_trend_recruitment",
    "bb_plot_year_trend_survival",
    "bb_predict_calf_cow_ratio",
    "bb_predict_calf_cow_ratio_samples",
    "bb_predict_calf_cow_ratio_trend",
    "bb_predict_calf_cow_ratio_trend_samples",
    "bb_predict_growth",
    "bb_predict_growth_samples",
    "bb_predict_lambda",
    "bb_predict_population_change",
    "bb_predict_population_change_samples",
    "bb_predict_recruitment",
    "bb_predict_recruitment_samples",
    "bb_predict_recruitment_trend",
    "bb_predict_recruitment_trend_samples",
    "bb_predict_survival",
    "bb_predict_survival_samples",
    "bb_predict_survival_trend",
    "bb_predict_survival_trend_samples",
    "bb_priors_recruitment",
    "bb_priors_recruitment_national",
    "bb_priors_survival",
    "bb_priors_survival_national",
    "coef",
    "converged",
    "esr",
    "estimates",
    "glance",
    "licensing_md",
    "logLik",
    "model_code",
    "model_recruitment",
    "model_survival",
    "nchains",
    "niters",
    "nobs",
    "npars",
    "nterms",
    "pars",
    "predict",
    "rhat",
    "samples",
    "tidy"
  ],
  "_help": [
    {
      "page": "augment.bboufit",
      "title": "Get Augmented Data from bboufit Object",
      "concept": [
        "generics"
      ],
      "topics": [
        "augment.bboufit"
      ]
    },
    {
      "page": "augment.bboufit_ml",
      "title": "Get Augmented Data from bboufit_ml Object",
      "concept": [
        "generics"
      ],
      "topics": [
        "augment.bboufit_ml"
      ]
    },
    {
      "page": "bb_fit_recruitment",
      "title": "Fit Recruitment Model",
      "concept": [
        "model"
      ],
      "topics": [
        "bb_fit_recruitment"
      ]
    },
    {
      "page": "bb_fit_recruitment_ml",
      "title": "Fit Recruitment Model with Maximum Likelihood",
      "concept": [
        "model"
      ],
      "topics": [
        "bb_fit_recruitment_ml"
      ]
    },
    {
      "page": "bb_fit_survival",
      "title": "Fit Survival Model",
      "concept": [
        "model"
      ],
      "topics": [
        "bb_fit_survival"
      ]
    },
    {
      "page": "bb_fit_survival_ml",
      "title": "Fit Survival Model with Maximum Likelihood",
      "concept": [
        "model"
      ],
      "topics": [
        "bb_fit_survival_ml"
      ]
    },
    {
      "page": "bb_plot_month",
      "title": "Plot Month",
      "topics": [
        "bb_plot_month",
        "bb_plot_month.bboufit_survival",
        "bb_plot_month.data.frame"
      ]
    },
    {
      "page": "bb_plot_month_survival",
      "title": "Plot Monthly Survival",
      "topics": [
        "bb_plot_month_survival",
        "bb_plot_month_survival.bboufit_survival",
        "bb_plot_month_survival.data.frame"
      ]
    },
    {
      "page": "bb_plot_year",
      "title": "Plot Year",
      "topics": [
        "bb_plot_year",
        "bb_plot_year.bboufit",
        "bb_plot_year.bboufit_ml",
        "bb_plot_year.data.frame"
      ]
    },
    {
      "page": "bb_plot_year_calf_cow_ratio",
      "title": "Plot Year Calf-Cow Ratio",
      "topics": [
        "bb_plot_year_calf_cow_ratio",
        "bb_plot_year_calf_cow_ratio.bboufit_recruitment",
        "bb_plot_year_calf_cow_ratio.data.frame"
      ]
    },
    {
      "page": "bb_plot_year_growth",
      "title": "Plot Year Population Growth",
      "topics": [
        "bb_plot_year_growth"
      ]
    },
    {
      "page": "bb_plot_year_population_change",
      "title": "Plot Year Population Change",
      "topics": [
        "bb_plot_year_population_change"
      ]
    },
    {
      "page": "bb_plot_year_recruitment",
      "title": "Plot Year Recruitment",
      "topics": [
        "bb_plot_year_recruitment",
        "bb_plot_year_recruitment.bboufit_recruitment",
        "bb_plot_year_recruitment.data.frame"
      ]
    },
    {
      "page": "bb_plot_year_survival",
      "title": "Plot Year Survival",
      "topics": [
        "bb_plot_year_survival",
        "bb_plot_year_survival.bboufit_survival",
        "bb_plot_year_survival.data.frame"
      ]
    },
    {
      "page": "bb_plot_year_trend_calf_cow_ratio",
      "title": "Plot Annual Calf-Cow Ratio Trend",
      "topics": [
        "bb_plot_year_trend_calf_cow_ratio",
        "bb_plot_year_trend_calf_cow_ratio.bboufit_recruitment",
        "bb_plot_year_trend_calf_cow_ratio.data.frame"
      ]
    },
    {
      "page": "bb_plot_year_trend_recruitment",
      "title": "Plot Annual Recruitment Trend",
      "topics": [
        "bb_plot_year_trend_recruitment",
        "bb_plot_year_trend_recruitment.bboufit_recruitment",
        "bb_plot_year_trend_recruitment.data.frame"
      ]
    },
    {
      "page": "bb_plot_year_trend_survival",
      "title": "Plot Annual Survival Trend",
      "topics": [
        "bb_plot_year_trend_survival",
        "bb_plot_year_trend_survival.bboufit_survival",
        "bb_plot_year_trend_survival.data.frame"
      ]
    },
    {
      "page": "bb_predict_calf_cow_ratio",
      "title": "Predict Calf-Cow Ratio",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_calf_cow_ratio"
      ]
    },
    {
      "page": "bb_predict_calf_cow_ratio_samples",
      "title": "Predict Calf-Cow Ratio Samples",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_calf_cow_ratio_samples"
      ]
    },
    {
      "page": "bb_predict_calf_cow_ratio_trend",
      "title": "Predict Calf-Cow Ratio Trend",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_calf_cow_ratio_trend"
      ]
    },
    {
      "page": "bb_predict_calf_cow_ratio_trend_samples",
      "title": "Predict Calf-Cow Ratio Trend Samples",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_calf_cow_ratio_trend_samples"
      ]
    },
    {
      "page": "bb_predict_growth",
      "title": "Predict Population Growth Lambda",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_growth",
        "bb_predict_lambda"
      ]
    },
    {
      "page": "bb_predict_growth_samples",
      "title": "Predict Population Growth Lambda Samples",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_growth_samples"
      ]
    },
    {
      "page": "bb_predict_population_change",
      "title": "Predict Population Change",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_population_change"
      ]
    },
    {
      "page": "bb_predict_population_change_samples",
      "title": "Predict Population Change Samples",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_population_change_samples"
      ]
    },
    {
      "page": "bb_predict_recruitment",
      "title": "Predict Recruitment",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_recruitment"
      ]
    },
    {
      "page": "bb_predict_recruitment_samples",
      "title": "Predict Recruitment Samples",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_recruitment_samples"
      ]
    },
    {
      "page": "bb_predict_recruitment_trend",
      "title": "Predict Recruitment Trend",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_recruitment_trend"
      ]
    },
    {
      "page": "bb_predict_recruitment_trend_samples",
      "title": "Predict Recruitment Trend Samples",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_recruitment_trend_samples"
      ]
    },
    {
      "page": "bb_predict_survival",
      "title": "Predict Survival",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_survival"
      ]
    },
    {
      "page": "bb_predict_survival_samples",
      "title": "Predict Survival Samples",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_survival_samples"
      ]
    },
    {
      "page": "bb_predict_survival_trend",
      "title": "Predict Survival Trend",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_survival_trend"
      ]
    },
    {
      "page": "bb_predict_survival_trend_samples",
      "title": "Predict Survival Trend Samples",
      "concept": [
        "analysis"
      ],
      "topics": [
        "bb_predict_survival_trend_samples"
      ]
    },
    {
      "page": "bb_priors_recruitment",
      "title": "Recruitment model default priors",
      "topics": [
        "bb_priors_recruitment"
      ]
    },
    {
      "page": "bb_priors_recruitment_national",
      "title": "Disturbance-informed national recruitment priors",
      "concept": [
        "priors"
      ],
      "topics": [
        "bb_priors_recruitment_national"
      ]
    },
    {
      "page": "bb_priors_survival",
      "title": "Survival model default priors",
      "topics": [
        "bb_priors_survival"
      ]
    },
    {
      "page": "bb_priors_survival_national",
      "title": "Disturbance-informed national survival priors",
      "concept": [
        "priors"
      ],
      "topics": [
        "bb_priors_survival_national"
      ]
    },
    {
      "page": "coef.bboufit",
      "title": "Get Tidy Tibble from bboufit Object.",
      "topics": [
        "coef.bboufit"
      ]
    },
    {
      "page": "coef.bboufit_ml",
      "title": "Get Tidy Tibble from bboufit_ml Object.",
      "topics": [
        "coef.bboufit_ml"
      ]
    },
    {
      "page": "converged.bboufit",
      "title": "Get Convergence of bboufit Object",
      "topics": [
        "converged.bboufit"
      ]
    },
    {
      "page": "converged.bboufit_ml",
      "title": "Get Convergence of bboufit_ml Object",
      "topics": [
        "converged.bboufit_ml"
      ]
    },
    {
      "page": "esr.bboufit",
      "title": "Get Effective Sample Rate of bboufit Object",
      "topics": [
        "esr.bboufit"
      ]
    },
    {
      "page": "estimates.bboufit",
      "title": "Estimates for bboufit Object",
      "topics": [
        "estimates.bboufit"
      ]
    },
    {
      "page": "estimates.bboufit_ml",
      "title": "Estimates for bboufit_ml Object",
      "topics": [
        "estimates.bboufit_ml"
      ]
    },
    {
      "page": "glance.bboufit",
      "title": "Get a Glance Summary of bboufit Object",
      "concept": [
        "generics"
      ],
      "topics": [
        "glance.bboufit"
      ]
    },
    {
      "page": "glance.bboufit_ml",
      "title": "Get a Glance Summary of bboufit_ml Object",
      "concept": [
        "generics"
      ],
      "topics": [
        "glance.bboufit_ml"
      ]
    },
    {
      "page": "model_code",
      "title": "Get Model Code",
      "topics": [
        "model_code",
        "model_code.bboufit",
        "model_code.bboufit_ml"
      ]
    },
    {
      "page": "model_recruitment",
      "title": "Build Nimble recruitment model.",
      "topics": [
        "model_recruitment"
      ]
    },
    {
      "page": "model_survival",
      "title": "Build Nimble survival model.",
      "topics": [
        "model_survival"
      ]
    },
    {
      "page": "nchains.bboufit",
      "title": "Get Number of Chains from bboufit Object",
      "topics": [
        "nchains.bboufit"
      ]
    },
    {
      "page": "niters.bboufit",
      "title": "Get Number of Iterations from bboufit Object",
      "topics": [
        "niters.bboufit"
      ]
    },
    {
      "page": "npars.bboufit",
      "title": "Get Number of Parameters from bboufit Object",
      "topics": [
        "npars.bboufit"
      ]
    },
    {
      "page": "npars.bboufit_ml",
      "title": "Get Number of Parameters from bboufit_ml Object",
      "topics": [
        "npars.bboufit_ml"
      ]
    },
    {
      "page": "nterms.bboufit",
      "title": "Get Number of Terms from bboufit Object",
      "topics": [
        "nterms.bboufit"
      ]
    },
    {
      "page": "nterms.bboufit_ml",
      "title": "Get Number of Terms from bboufit_ml Object",
      "topics": [
        "nterms.bboufit_ml"
      ]
    },
    {
      "page": "pars.bboufit",
      "title": "Get Parameters from bboufit Object",
      "topics": [
        "pars.bboufit"
      ]
    },
    {
      "page": "pars.bboufit_ml",
      "title": "Get Parameters from bboufit_ml Object",
      "topics": [
        "pars.bboufit_ml"
      ]
    },
    {
      "page": "predict.bboufit_recruitment",
      "title": "Predict Recruitment",
      "topics": [
        "predict.bboufit_recruitment"
      ]
    },
    {
      "page": "predict.bboufit_survival",
      "title": "Predict Survival",
      "topics": [
        "predict.bboufit_survival"
      ]
    },
    {
      "page": "rhat.bboufit",
      "title": "Get Rhat of bboufit Object",
      "topics": [
        "rhat.bboufit"
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    },
    {
      "page": "samples",
      "title": "Get MCMC samples",
      "topics": [
        "samples",
        "samples.bboufit",
        "samples.bboufit_ml"
      ]
    },
    {
      "page": "tidy.bboufit",
      "title": "Get Tidy Tibble from bboufit Object.",
      "concept": [
        "generics"
      ],
      "topics": [
        "tidy.bboufit"
      ]
    },
    {
      "page": "tidy.bboufit_ml",
      "title": "Get Tidy Tibble from bboufit_ml Object.",
      "concept": [
        "generics"
      ],
      "topics": [
        "tidy.bboufit_ml"
      ]
    }
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  "_readme": "https://github.com/poissonconsulting/bboutools/raw/HEAD/README.md",
  "_rundeps": [
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    "bboudata",
    "bbouNationalPriors",
    "chk",
    "cli",
    "coda",
    "cpp11",
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    "lifecycle",
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    "Matrix",
    "mcmcderive",
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    "newdata",
    "nimble",
    "nimbleQuad",
    "nlist",
    "numDeriv",
    "pillar",
    "pkgconfig",
    "polynom",
    "pracma",
    "purrr",
    "R6",
    "RColorBrewer",
    "rescale",
    "rlang",
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    "scales",
    "stringi",
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    "tibble",
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    "vctrs",
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    "withr"
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  "_vignettes": [
    {
      "source": "bboutools.Rmd",
      "filename": "bboutools.html",
      "title": "Getting Started with bboutools",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Philosophy",
        "Installation",
        "Getting Help",
        "Providing Data",
        "Recruitment",
        "Fit a Bayesian model",
        "Convergence",
        "Summary",
        "Priors",
        "Survival",
        "Predictions",
        "Recruitment by year",
        "Recruitment for a 'typical' year",
        "Recruitment trend",
        "Survival by year for a 'typical' month",
        "Survival by month for a 'typical' year",
        "Population Growth",
        "Multi-Population Analysis",
        "Maximum Likelihood",
        "Understanding bboufit objects",
        "References"
      ],
      "created": "2024-04-27 19:54:18",
      "modified": "2026-03-17 23:53:44",
      "commits": 11
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  "_score": 5.179551791165188,
  "_indexed": true,
  "_nocasepkg": "bboutools",
  "_universes": [
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}