Package: embr 0.2.0.9001

Joe Thorley

embr: Model Builder Utility Functions and Virtual Classes

Utility functions and virtual classes shared by model builder packages such as tmbr, jmbr and smbr.

Authors:Joe Thorley [aut, cre], Kirill Müller [aut], Nicole Hill [ctb], Ayla Pearson [ctb], Nadine Hussein [ctb], Poisson Consulting [cph, fnd], Seb Dalgarno [ctb]

embr_0.2.0.9001.tar.gz
embr_0.2.0.9001.zip(r-4.7)embr_0.2.0.9001.zip(r-4.6)embr_0.2.0.9001.zip(r-4.5)
embr_0.2.0.9001.tgz(r-4.6-any)embr_0.2.0.9001.tgz(r-4.5-any)
embr_0.2.0.9001.tar.gz(r-4.7-any)embr_0.2.0.9001.tar.gz(r-4.6-any)
embr_0.2.0.9001.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
embr/json (API)
NEWS

# Install 'embr' in R:
install.packages('embr', repos = c('https://poissonconsulting.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/poissonconsulting/embr/issues

Datasets:

On CRAN:

Conda:

analysesmbr

4.86 score 3 stars 4 packages 8 scripts 90 exports 63 dependencies

Last updated from:a585f79167. Checks:2 NOTE, 2 OK, 5 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE222
source / vignettesOK203
linux-release-x86_64NOTE215
macos-release-arm64ERROR122
macos-oldrel-arm64ERROR125
windows-develERROR164
windows-releaseERROR156
windows-oldrelERROR166
wasm-releaseOK122

Exports:add_analysesadd_modelsanalyseanalyse_residualsanalyse1analysesas.analysesas.modelas.modelsaugmentbackwardsbase_modelcheck_mb_analysischeck_mb_codecheck_mb_modelcheck_model_parscheck_uniquely_named_listcodecoefcoef_profilecomment_stringdata_setdrop_parselapsedestimatesfittedget_analysis_modeget_modelglanceICis_bayesianis_frequentistis_namedlistis.lmb_analysisis.lmb_codeis.lmb_modelis.mb_analysesis.mb_analysisis.mb_codeis.mb_modelis.mb_modelsis.mb_null_analysisis.syntacticload_modellog_lik_drawslog_odds_ratio2log_prior_drawslogLikmake_all_modelsmb_codemcmc_derive_datamodelmodelsmodify_datamodify_new_datamonitornew_analysisnew_exprnew_expr<-new_mb_codengensnmodelsnthinodds_ratio2plot_dataplot_residualsposterior_predictive_checkpowerscale_sensitivitypredictproportional_change2proportional_difference2R2random_effectsreanalysereanalyse1rm_commentssample_sizescalar_nlistsd_priors_byselect_rescale_datasensitivityset_analysis_modesimulate_residualssort_by_icsort_nlisttemplatetemplate<-termstidyupdate_model

Dependencies:abindaudiobackportsbeeprcheckmatechkclicodacodetoolscpp11distributionaldplyrextrasfarverforeachgenericsggdistggh4xggplot2gluegtablehmsisobanditeratorslabelinglatticelifecyclelubridatemagrittrmatrixStatsmcmcdatamcmcderivemcmcrnewdatanlistnumDerivpillarpkgconfigplyrposteriorpriorsensepurrrquadprogR6RColorBrewerRcpprescalerlangS7scalesstringistringrtensorAtermtibbletidyrtidyselecttimechangeuniversalsutf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Add analysesadd_analyses
Add model(s)add_models
Analyse Modelsanalyse
Analyse Residualsanalyse_residuals
Analyse Character Modelanalyse.character
Analyse Single Modelanalyse.mb_model
Analyseanalyse.mb_models
Analyseanalyse1
MB Analysesanalyses
Coerce to an mb_analyses objectas.analyses
Coerce to an mb_model objectas.model
Coerce to an mb_models objectas.models
Backwardsbackwards
Base Modelbase_model
Check MB Analysischeck_mb_analysis
Check MB Codecheck_mb_code
Check MB Modelcheck_mb_model
Check Model Parameterscheck_model_pars
Check Uniquely Named Listcheck_uniquely_named_list
Codecode
Coef Profilecoef_profile
Coef TMB Analysescoef_profile.mb_analyses
Coef Profile Analysiscoef_profile.mb_analysis
Coef TMB Meta Analysescoef_profile.mb_meta_analyses
Coef TMB Meta Analysiscoef_profile.mb_meta_analysis
Coef TMB Analysescoef.mb_analyses
Coef JAGS Analysiscoef.mb_analysis
Coef TMB Meta Analysescoef.mb_meta_analyses
Coef TMB Meta Analysiscoef.mb_meta_analysis
Comment Stringcomment_string
Data Setdata_set
Density99density99
Drop parsdrop_pars
Elapsedelapsed
Estimatesestimates.mb_analysis
Fitted Valuesfitted.mb_analysis
Get Analysis Modeget_analysis_mode
Retrieve modelget_model
Information CriterionIC
Test if is bayesianis_bayesian
Test if is frequentistis_frequentist
Is Named Listis_namedlist
Is a LMB Analysisis.lmb_analysis
Is a LMB Codeis.lmb_code
Is a LMB Modelis.lmb_model
Is MB Analyses?is.mb_analyses
Is MB Analysis?is.mb_analysis
Is MB Code?is.mb_code
Is MB Model?is.mb_model
Is MB Models?is.mb_models
Is MB Null Analysis?is.mb_null_analysis
Is syntacticis.syntactic
Load Modelload_model
Extract log likelihood drawslog_lik_draws.mb_analysis
Extract log prior drawslog_prior_draws.mb_analysis
Log-LikelihoodlogLik.mb_analysis
Log-LikelihoodlogLik.mb_null_analysis
Make All Modelsmake_all_models
MB Codemb_code new_mb_code
Derive Datamcmc_derive_data.mb_analyses
Derive Datamcmc_derive_data.mb_analysis
Derivemcmc_derive.mb_analyses
Derivemcmc_derive.mb_analysis
MB Modelmodel
MB Modelsmodels
Modify Datamodify_data
Modify New Datamodify_new_data
pars to monitormonitor
MB Analysisnew_analysis
new_exprnew_expr
new_expr setnew_expr<-
Total Number of MCMC simulations generated (including warmup)ngens
Number Modelsnmodels
Number of termsnterms.mb_analysis
Thinning Ratenthin
Parameter Descriptionsparams
Plot Dataplot_data
Plot Residualsplot_residuals
Plot Analysisplot.mb_analysis
Posterior Predictive Checkposterior_predictive_check
Posterior Predictive Checkposterior_predictive_check.mb_analysis
Run Power-Scaling Sensitivity Analysispowerscale_sensitivity.mb_analysis
Predictpredict.mb_analyses
Predictpredict.mb_analysis
R2R2
R2R2.mb_analysis
Random Effectsrandom_effects
Reanalysereanalyse
Reanalysereanalyse.mb_analyses
Reanalysereanalyse.mb_analysis
Reanalysereanalyse.mb_meta_analyses
Reanalysereanalyse.mb_meta_analysis
Reanalysereanalyse1
Residualsresiduals.mb_analysis
Removes comments from the template strings(s) of an mb object or a character vector.rm_comments
Sample Sizesample_size
Scalar Named Listscalar_nlist
Multiply Standard Deviation of Priors Bysd_priors_by sd_priors_by.mb_analysis sd_priors_by.mb_model
Select and Rescale Dataselect_rescale_data
Summarize model sensitivitysensitivity
Summarize model sensitivitysensitivity.mb_analysis
Set Analysis Modeset_analysis_mode
Simulate Residualssimulate_residuals
Sort Analyses by ICsort_by_ic
Sort Named Listsort_nlist
Templatetemplate
Set Templatetemplate<-
Termsterms.mb_analysis
Update MB Modelupdate_model